FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490301
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27250.5557810406260644No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14220.2900259228514729No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7880.16071760000489493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7270.14827626294867846No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5820.11870259289701632No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)