FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences558530
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18950.33928347626806077No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18840.33731402073299555No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12500.22380176534832508No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10510.18817252430487172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9030.16167439528763003No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8100.14502354394571465No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6810.12192720176176748No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6070.10867813725314666No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6060.108499095840868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)