FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461882
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74901.6216263028219329No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7890.17082285085801135No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6480.14029557332825268No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5440.1177789998311257No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4950.10717022962574857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)