FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461286
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26320.5705787732556376No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17810.386094527039624No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8140.17646319203270855No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8040.17429533955073426No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7730.1675749968566139No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)