FastQCFastQC Report
Wed 31 May 2023
EGAF00007942571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464394
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10890.23449915373583638No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9620.20715168585296104No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8880.1912169407873487No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6930.14922673419553223No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6650.14319737119773296No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6250.13458399548659114No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5220.1124045530304009No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5150.1108972122809511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)