FastQCFastQC Report
Wed 31 May 2023
EGAF00007942572

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942572
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464394
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65061.400965559417219No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23720.5107731796707107No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10820.23299181298638655No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7400.1593474506561239No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6840.14728872466052534No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6240.13436866109381257No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5470.11778791284986455No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5120.11025120910261545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)