FastQCFastQC Report
Sun 21 May 2023
EGAF00007942574

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942574
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453354
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63631.4035389563122858No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46361.0226004402740463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15590.34388138187817907No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG10220.22543089947370046No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8320.1835210453641084No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG8060.17778601269648No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7040.15528703838501481No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6150.13565558040736378No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6020.1327880640735496No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5990.13212632953497708No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5940.13102343863735624No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5870.12947939138068704No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5700.1257295623287762No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5480.12087684237924448No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5380.11867106058400277No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5330.11756816968638195No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5310.1171270133273336No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4880.10764215160779436No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4540.10014249350397261No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)