FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433969
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12250.28227822724664664No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9280.21384015908970455No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6940.15991925690544717No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6750.1555410639930502No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4580.10553749230935851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)