FastQCFastQC Report
Sun 21 May 2023
EGAF00007942578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433969
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62791.4468775419442403No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12020.27697830951058716No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10010.23066163712154555No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6790.15646278881671272No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6740.15531063278713456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5480.1262763008417652No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4700.10830266678034607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)