FastQCFastQC Report
Wed 31 May 2023
EGAF00007942580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459365
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63531.382996092431944No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24000.52246035287843No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10170.2213925745322347No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7770.1691465392443917No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7440.1619627093923133No Hit
GAACGTACCACTGACGGTAAACTGGATCCGC7290.1586973321868231No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6630.1443296724826663No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5190.11298205130996049No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4750.10340361150718927No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4710.10253284425239188No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4650.10122669337019581No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4640.10100900155649646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)