FastQCFastQC Report
Sun 21 May 2023
EGAF00007942582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453692
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26350.5807904922282077No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22210.48953915872442094No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18460.4068839653333098No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18360.4046798268428802No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13750.30306904243407423No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11080.24421854473960308No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10570.23297743843841198No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9260.2041032242137838No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8100.17853521772480008No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7530.16597162832935117No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7050.15539176357528897No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6780.14944058965112894No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5380.11858265078511412No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5060.1115294076157393No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4940.10888444142722377No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4940.10888444142722377No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4880.10756195833296599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)