FastQCFastQC Report
Sun 21 May 2023
EGAF00007942584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397490
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44611.1222923847140809No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25390.6387582077536541No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13340.3356059271931369No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10210.25686180784422247No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7420.18667136280157992No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA7410.1864197841455131No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5920.14893456439155703No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5840.14692193514302246No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4700.11824196835140506No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4390.11044303001333367No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG3990.10037988377066089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)