FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421216
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24030.5704911494340197No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA21340.5066284281698701No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17740.42116158930335035No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16370.3886367089569247No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG15830.37581668312694677No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14840.3523133024386538No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13510.32073805363518954No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG12380.29391096254653193No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12270.2912994758033883No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG11950.28370242345969765No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11620.27586796323026663No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG11280.2677960951150954No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG11020.26162349008584673No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9970.23669566208311174No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8790.2086815315657525No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8580.20369596596520548No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8470.20108447922206185No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8340.1979981767074375No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7990.18968890070652586No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7680.18232925624857554No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG7610.1806674010483932No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7070.16784737521841525No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7020.1666603357897136No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT6850.16262440173212794No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6840.1623869938463876No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6530.1550273493884373No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6450.15312808630251462No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG6260.1486173364734483No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5990.1422073235584593No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5760.13674694218643166No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5500.13057433715718303No Hit
GTCGATCAGGTTATCGTCATCGAACGGTTCATCAGATTCGTCCA5500.13057433715718303No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5460.12962470561422168No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5360.12725062675681836No Hit
CAGTTCACCGAACAGCAGATCCGTATCGTCGTGCGGGGTAGAAA5300.12582617944237637No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5280.1253513636708957No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5130.1217902453847907No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5020.11917875864164704No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4870.11561764035554205No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4770.11324356149813872No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4720.11205652206943706No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4540.10778318012611106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)