FastQCFastQC Report
Wed 31 May 2023
EGAF00007942589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431512
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18410.4266393518604349No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16520.382839874673242No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9700.22479096757448228No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9610.22270527818461597No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8170.18933424794675469No Hit
GCGGACGCGACGCTCTTTAGTAGCGGTACCTGCAAAGCCCAGGG7900.18307717977715568No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7490.17357570588998683No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7200.16685515118930644No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6360.14738871688388736No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6360.14738871688388736No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5920.13719201320009639No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5790.13417935074806728No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5390.12490962012643914No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5180.12004301155008436No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5090.11795732216021804No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5000.11587163277035169No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT4750.11007805113183412No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4530.10497969928993864No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4400.10196703683790949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)