FastQCFastQC Report
Sun 21 May 2023
EGAF00007942590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431512
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59331.3749327944529932No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39100.9061161682641502No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15720.3643004134299857No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC10140.23498767125827322No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9830.2278036300265114No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9750.2259496839021858No Hit
CGTCGTCGTTCCGAACTGCGCGATTACGGCG7830.18145497691837076No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7270.16847735404809136No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7000.16222028587849238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6500.1506331226014572No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6290.14576651402510243No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6050.14020467565212555No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5810.13464283727914866No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5580.12931274217171249No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5550.12861751237509036No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5530.12815402584400898No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5480.12699530951630547No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5330.12351916053319491No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5190.12027475481562505No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4750.11007805113183412No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4720.109382821335212No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4570.10590667235210145No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4490.10405272622777582No Hit
GCAGCTACCGCGACCGGTCTGCCGCTGCGTG4410.1021987801034502No Hit

[OK]Adapter Content

Adapter graph