FastQCFastQC Report
Wed 31 May 2023
EGAF00007942594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443084
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19330.43626039306316633No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7750.1749104007366549No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6850.15459822516723692No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6320.14263661066524633No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5970.1347374312771393No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4470.10088380532810935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)