FastQCFastQC Report
Sun 21 May 2023
EGAF00007942595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences423743
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT14200.3351087805580269No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12320.29074226594893604No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG12220.28838234495909076No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7290.17203824015971944No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5880.13876335420290128No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5690.1342795043221953No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5370.12672775715469048No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT5170.12200791517499995No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4860.11469216010647965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)