FastQCFastQC Report
Sun 21 May 2023
EGAF00007942597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444968
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8960.20136279462792828No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6990.15708994804120746No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6770.15214577228025386No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6390.14360583232951582No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5830.13102065766527032No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5450.12248071771453228No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5110.11483971881124037No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4950.11124395462145592No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)