FastQCFastQC Report
Sun 21 May 2023
EGAF00007942598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences444968
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12500.2809190773269089No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11390.2559734632602794No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9670.2173189982200967No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7790.17506876899012963No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7140.16046097696913036No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6120.1375379802592546No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6020.13529062764063932No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5630.12652595242803977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)