FastQCFastQC Report
Wed 31 May 2023
EGAF00007942599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448088
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8840.19728267661709306No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7250.16179857527985575No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6540.14595347342486298No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6420.14327542804092053No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6070.13546446233775508No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5980.13345592829979827No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5240.11694131509881987No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4690.10466694042241703No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)