FastQCFastQC Report
Sun 21 May 2023
EGAF00007942600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448088
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12690.283203299351913No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10950.24437164128474764No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9960.22227776686722253No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7530.16804734784238812No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7340.16380710931781256No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.14305225759225865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6000.133902269197122No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5320.11872667868811483No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)