FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007942604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445132
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA14680.32978981515595374No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10190.2289208594304611No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7690.17275774377038722No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6390.1435529236271488No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5820.13074773325665195No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5810.13052308079401165No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5700.1280519037049684No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5580.12535607415328487No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5360.12041371997519837No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4980.11187692639486714No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4890.10985505423110448No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4720.10603596236621947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)