FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942606

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942606
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434212
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19640.4523136163901504No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14340.33025342459443774No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9920.22845983068178677No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7230.1665085257892458No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6140.1414055806840898No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5960.137260140208009No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5810.13380560647794165No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5740.13219349073724354No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.12804805026116275No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5030.11584203108159147No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA4630.10662994113474523No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG4460.10271480290733558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)