FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942608

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942608
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402433
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19850.49324980804258095No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19410.48231631103811073No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17800.4423096515444807No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16160.4015575263460004No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14750.36652063821803876No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG13650.339186895706863No Hit
ATCCACTCCCAGCGTGAACGTGACATGTTCC13550.33670201002402883No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12610.31334408460538776No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG11860.29470744198413157No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG11040.2743313793848914No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11010.27358591368004115No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9520.23656111700581214No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8330.20699097738008562No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8100.20127574030956705No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7570.188105846190546No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7390.18363305196144453No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7030.17468746350324155No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6980.17344502066182443No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC6930.17220257782040738No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6780.16847524929615615No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG6340.15754175229168582No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6140.1525719809260175No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5710.1418869724898306No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5190.12896556693909297No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4970.12349881843685781No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4840.1202684670491734No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG4810.11952300134432316No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4600.1143047414103714No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4570.11355927570552117No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4520.1123168328641041No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4410.1095834586129865No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4300.10685008436186892No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4300.10685008436186892No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG4220.1048621758156016No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4130.10262577870105087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)