FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488937
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23870.4882019564892819No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23240.475316860863465No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19780.4045510975851695No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17040.348511157879236No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT16160.3305129290685712No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13840.28306305311318225No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12940.26465577364772963No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10710.219046625638886No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9870.2018664981377969No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9120.18652709858325306No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8790.17977776277925378No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7620.15584829947416537No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7580.1550301981645897No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6440.13171431084168309No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6360.13007810822253174No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6230.1274192789664108No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6130.12537402569247164No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6100.12476044971028988No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5790.11842016456107841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)