FastQCFastQC Report
Wed 31 May 2023
EGAF00007942627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465944
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT28380.6090860704290644No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22590.48482221039438217No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18940.4064866164174235No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG18310.3929656782789348No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17200.3691430729873118No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13730.2946706041927785No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12970.2783596312003159No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC12960.27814501313462564No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11290.2423037961643459No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10840.23264598320828253No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9300.19959480109197672No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7840.16826056350119328No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG7350.1577442782823687No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6760.14508181240664114No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6470.1388578885016225No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6460.13864327043593222No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6130.13156087426815238No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5930.12726851295434644No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5880.12619542262589495No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5810.12469309616606288No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5800.12447847810037257No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5560.11932764452380544No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5470.11739608193259275No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5400.11589375547276068No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5360.11503528320999949No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5310.113962192881548No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5120.10988444963343233No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4980.10687979671376818No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG4880.1047336160568652No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG4850.10408976185979431No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4750.10194358120289132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)