FastQCFastQC Report
Wed 31 May 2023
EGAF00007942628

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942628
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465944
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA55951.2007880775372146No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47851.0269474443280737No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26150.5612262417801281No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24360.5228096080215648No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22150.4753790155040091No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19620.42108064488436375No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15000.3219270985354463No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14240.3056161255429837No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11940.2562539704342153No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10670.2289974760915475No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9140.19616091204093197No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9070.19465858558109986No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7790.1671874731727418No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7190.15431038923132395No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6950.14915955565475678No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6780.14551104853802171No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6430.13799941623886133No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6320.13563861751626805No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6310.13542399945057776No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6130.13156087426815238No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5950.12769774908572704No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5930.12726851295434644No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5900.12662465875727555No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5730.1229761516405405No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5590.11997149872087633No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5430.11653760966983157No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5410.11610837353845098No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5310.113962192881548No Hit
TTCAAAGCATACGCGCACATGTATGACGAAA5300.11374757481585769No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5130.11009906769912263No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5020.10773826897652937No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4920.10559208831962638No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4900.10516285218824581No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG4780.10258743539996223No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4670.10022663667736895No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)