FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942630

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942630
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480425
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA40270.8382161627725451No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24460.5091325388978509No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20220.42087734818129785No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18200.3788312431701098No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15660.3259613883540615No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10490.21834833740958529No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10130.2108549721600666No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC8510.17713482853723264No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6690.13925170422022168No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5930.12343237758234897No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4810.10011968569495759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)