FastQCFastQC Report
Sun 21 May 2023
EGAF00007942633

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942633
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450421
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13830.3070460746723621No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11590.25731482324314364No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8890.19737090410971067No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7930.17605751064004566No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7550.16762095905830324No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7500.16651088648175816No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7060.1567422478081617No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6500.1443094349508571No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6470.14364339140493007No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5360.11899978020562985No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4980.11056322862388743No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4720.10479085122585316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)