FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450421
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23290.5170718061546864No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14100.3130404665857054No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14090.3128184520703963No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10510.23333725558977045No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8080.1793877283696808No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8070.1791657138543718No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7770.17250527839510146No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7320.162514625206196No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7210.16007246553779686No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6650.14763965268049226No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6330.1405351881906039No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5690.12632625921082719No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5220.11589157699130369No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5180.11500351893006765No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5120.11367143183821359No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4720.10479085122585316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)