FastQCFastQC Report
Wed 31 May 2023
EGAF00007942636

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942636
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences433751
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49011.1299109396865945No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28830.6646670555226386No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27190.626857344421108No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15630.3603449905590996No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12000.2766564226941264No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11140.25682937906771397No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8930.20587848788821234No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8140.18766527339418237No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7230.16668549467321112No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7110.16391893044626987No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6740.1553886907465343No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6520.1503166563304753No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6280.1447835278765928No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5920.13648383519576898No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5790.13348672394991595No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5730.13210344183644535No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5580.12864523655276874No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5510.12703140742038635No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5460.1258786723258275No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5360.12357320213670978No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5070.11688733858826839No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5020.11573460349370952No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4980.11481241541806243No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4930.11365968032350357No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4690.10812655186962104No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4420.1019017823590032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)