FastQCFastQC Report
Sun 21 May 2023
EGAF00007942639

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942639
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445415
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12750.2862499017769945No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9690.21754992535051582No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9320.2092430654558109No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7480.1679332757091701No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6610.14840092947026928No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6440.1445842641132427No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6330.1421146571175196No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5850.1313381902270916No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5720.12841956377760066No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5700.12797054432383284No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5680.12752152487006502No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5630.12639897623564542No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5250.11786760661405656No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5090.11427545098391387No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG5080.11405094125702996No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5030.11292839262261037No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5000.11225486344195862No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA4970.11158133426130688No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4940.11090780508065512No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4620.10372349382036976No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4610.10349898409348585No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4510.10125388682464669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)