FastQCFastQC Report
Wed 31 May 2023
EGAF00007942640

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942640
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences445415
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22740.5105351189340278No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12490.28041264887801265No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10200.2289999214215956No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9630.2162028669892123No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8730.19599699156965977No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7610.17085190215866103No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6970.15648327963809033No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6860.15401367264236723No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6650.14929896837780496No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6360.14278818629817136No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6230.13986955984868046No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5910.1326852485883951No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5900.13246073886151116No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5890.13223622913462726No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5570.1250519178743419No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5570.1250519178743419No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5520.12392936923992233No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5480.12303133033238665No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5460.12258231087861882No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5410.12145976224419923No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5210.1169695677065209No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5040.1131529023494943No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4920.11045878562688728No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC4660.10462153272790545No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4630.10394800354725367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)