FastQCFastQC Report
Wed 31 May 2023
EGAF00007942642

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942642
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447686
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48381.080668146870798No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25440.5682554290283814No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15660.3497987428688858No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13740.30691154067806453No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13550.3026674946279312No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA12680.2832342311352153No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12620.28189400606675213No Hit
GTCCTGGTGGTTACGGAAAATGGCTACGGTA11700.26134388835031697No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11310.2526324254053064No Hit
GATGTTGCTCACGCGAACTCCGTGGACGAAG8770.19589623084036578No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8090.18070701339778328No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7430.16596453764468846No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7110.15881667061288493No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7080.15814655807865335No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6980.15591284963121474No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6940.15501936625223928No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6800.15189217442582523No Hit
TGTGCAGCTCGCACCAAAACCGTGAACGCGG6630.1480948700651796No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6630.1480948700651796No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6350.14184048641235153No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6250.13960677796491291No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6040.13491599022529183No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5630.12575778559079354No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5480.12240722291963564No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5400.12062025616168476No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5300.11838654771424614No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG5240.11704632264578298No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG5140.11481261419834439No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5070.11324901828513735No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5040.11257890575090578No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4750.10610115125333382No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4630.10342070111640747No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4480.10007013844524958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)