FastQCFastQC Report
Sun 21 May 2023
EGAF00007942644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443244
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21030.47445650702547576No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10260.23147521455451175No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8700.19628015269242222No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7990.1802618873577533No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7840.17687774679409085No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.1443899973829313No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5280.11912174784091832No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5120.11551199790634503No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4860.10964615426266346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4510.1017498262807844No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)