FastQCFastQC Report
Sun 21 May 2023
EGAF00007942646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442517
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32820.7416664218549797No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22340.5048393621036028No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21800.49263644108587923No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19080.43116987595956763No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14180.32043966672466817No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13500.30507302544309034No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12760.28835050404843204No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11730.26507456210721847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10890.24609224052409284No Hit
CGTCCATGGGCGGCATTCCGTGGTAGCTGGG10610.2397647999963843No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9910.22394619867711296No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9420.21287317775362302No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9280.20970945748976874No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9150.20677171724476123No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8460.1911790959443366No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8430.1905011558877964No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7870.17784627483237933No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7810.17649039471929892No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7380.1667732539088894No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7180.1622536535319547No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6930.15660415306078637No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6610.1493727924576909No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6510.14711299226922356No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6070.13716987143996728No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5940.13423213119495975No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5840.13197233100649242No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5830.13174635098764567No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4430.10010914834910298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)