FastQCFastQC Report
Sun 21 May 2023
EGAF00007942648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences403169
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41761.0357939226478228No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13590.3370794877582354No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11600.28772053406883963No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10230.253739746855537No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9650.23935372015209505No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8670.21504629572214135No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8640.21430219089265296No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8450.2095895269725599No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8320.20636507271144358No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8230.20413275822297847No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8110.20115633890502496No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7120.17660087953190845No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7000.17362446021395495No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6830.16940786618018747No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6700.16618341191907116No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6330.15700611902204784No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6290.15601397924939667No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6140.15229345510195474No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.14956507072716405No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5520.1369152886258616No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5250.1302183451604662No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5100.12649782101302431No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4980.12352140169507081No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4900.12153712214976846No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4790.11880873777497775No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4530.11235982925274512No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4480.11111965453693116No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4480.11111965453693116No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4460.11062358465060557No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG4420.1096314448779544No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG4260.10566288578734973No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4160.10318253635572179No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)