FastQCFastQC Report
Sun 21 May 2023
EGAF00007942649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447861
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15650.34943877676332613No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG15590.34809907538276386No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG15000.3349253451405682No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT11120.24829132253087455No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG10690.2386901293035116No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10260.2290889360761486No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10020.22373013055389954No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9470.21144953456541205No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7540.1683558068239923No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6250.1395522271419034No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5830.13017431747796748No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4770.10650625975470067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)