FastQCFastQC Report
Sun 21 May 2023
EGAF00007942650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447861
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48041.0726542387035263No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16260.36305907413237587No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15460.34519638905821226No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG15380.3434101205507959No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11580.2585623664485186No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA11000.24561191976975No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG10600.2366805772326682No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10270.22931221963957568No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10230.2284190853858675No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8220.18353908913703137No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.1460274504812877No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5830.13017431747796748No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5810.1297277503511134No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5470.12213610919459385No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA4620.10315700630329501No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4550.10159402135930568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)