FastQCFastQC Report
Sun 21 May 2023
EGAF00007942654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431419
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA37190.8620389922557885No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22210.514812745845686No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21140.4900108711021072No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16500.38245881613929844No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14930.3460672803005895No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14750.34189500230634257No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14530.33679555142448525No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14060.3259012699950628No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13330.30898036479617264No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10710.2482505406576901No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9570.2218261133607931No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9160.2123225912627863No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8710.20189189627716908No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6880.1594737366689923No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6620.1534471128995246No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6430.1490430416833751No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5910.13698979414443962No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4480.10384336341236709No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)