FastQCFastQC Report
Sun 21 May 2023
EGAF00007942656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392658
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40291.0260837675534433No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22260.5669055513958713No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17680.450264606858895No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10050.2559479241477316No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9410.23964875285872184No Hit
GCAGCACAGGCTGACAAAATTGGTGATGATC7420.18896851713195706No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6190.15764354731089142No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6030.15356875448863896No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5080.1293746721065151No Hit
ATGGGTTACGGCCTGCTGGACATTGCAAACC4940.1258092283870442No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4490.1143488735744592No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA4140.10543526427578198No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4110.10467124062160965No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4090.10416189151882808No Hit
AGCAACACCACTACCATGCACACCTCTTATC3930.10008709869657563No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)