FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493226
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38530.7811834737017108No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28170.5711377745698726No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16040.3252058893894482No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12750.2585021876381213No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG10200.206801750110497No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG10170.20619350966899555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9420.190987498631459No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8710.17659247484925775No Hit
GTCCAGCGTGTTGCAAAACTGCGCGACGAAA7780.15773702116271243No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7500.15206011037536543No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7400.15003264223702725No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6730.13644860571016126No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6440.13056894810898048No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6430.13036620129514664No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6240.12651401183230404No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6240.12651401183230404No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6100.12367555643863057No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG4980.10096791328924265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)