FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532293
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG24410.45858202155579725No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15610.2932595393890207No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14560.2735335614032121No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT11760.22093095344105596No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11690.21961588824200204No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11410.21435562744578646No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC11160.20965896602059392No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9410.1767823360442463No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8670.16288021822567644No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8410.15799569034347624No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7710.1448450383529372No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7420.1393969110997139No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7400.13902117818569848No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7270.13657891424459837No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT7250.13620318133058296No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7060.13263371864743664No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6970.13094292053436735No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6100.1145985387746974No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5760.10821107923643558No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5750.10802321277942786No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)