FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532293
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46000.8641857022354229No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG23450.4405468416830581No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20810.3909500970330251No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14990.28161181905454324No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12350.23201507440451027No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11990.22525188195223309No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC11100.20853176727854772No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC11060.20778030145051693No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10440.19613258111603948No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10260.19275098488990086No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9140.1717099417050384No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8660.16269235176866875No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8580.16118942011260715No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8130.15273542954726063No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7330.13770611298664456No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7330.13770611298664456No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT7320.13751824652963687No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6800.12774919076523644No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6710.12605839265216712No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6520.12248892996902083No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6280.117980135000836No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5880.11046547672052798No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5550.10426588363927386No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5480.10295081844021996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)