FastQCFastQC Report
Wed 31 May 2023
EGAF00007942661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563880
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18960.33624175356458824No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15060.267078101723771No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13370.23710718592608354No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10980.19472228133645456No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10690.1895793431226502No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG9480.16812087678229412No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8960.1588990565368518No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8790.1558842306873803No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8750.15517485989926935No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8600.1525147194438533No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8380.1486131801092431No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7330.1299921969213308No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7190.1275093991629425No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6930.12289848904022131No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6750.11970632049372208No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6010.10658296091366959No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5650.10019862382067107No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)