FastQCFastQC Report
Sun 21 May 2023
EGAF00007942662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563880
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18930.335709725473505No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17180.30467475349365114No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC16170.28676314109384976No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15990.28357097254735053No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15220.26991558487621475No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11850.21015109597786763No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10690.1895793431226502No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10650.18886997233453925No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10390.18425906221181812No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10180.18053486557423565No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9670.1714903880258211No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8960.1588990565368518No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8820.1564162587784635No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8580.15216003404979783No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7880.13974604525785628No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7730.13708590480244023No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7520.13336170816485776No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7050.12502660140455416No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6040.10711498900475279No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5830.10339079236717033No Hit

[OK]Adapter Content

Adapter graph