FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523121
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15080.2882698266748993No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11840.2263338692195496No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11420.2183051339938561No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11010.2104675591306791No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10240.19574821121690775No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9970.19058688142896194No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9020.17242664698989335No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8990.1718531659023438No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7810.14929624312539547No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7400.14145866826221848No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT7100.13572385738672316No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6950.13285645194897547No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5640.10781444445931247No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5430.10380007684646572No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5390.10303543539639969No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA5380.10284427503388317No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5290.10112383177123456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)