FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007942664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences523121
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21290.40698041179765293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20820.39799587475937687No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14480.2768002049239086No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12850.24564106583371725No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12480.23856813242060632No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11260.21524656819359192No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11190.21390844565597633No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10690.20435042753015076No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10130.19364544722922614No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8150.15579569545095684No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7750.1481492809502964No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7230.1382089420994378No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6990.13362109339904152No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6350.1213868301979848No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5540.10590284083414736No Hit
GGTCAGGTGAAACCGGAAGTTAAACCAACCC5480.1047558786590483No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5420.10360891648394921No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5360.10246195430885015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)