FastQCFastQC Report
Sun 21 May 2023
EGAF00007942666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530690
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32060.6041191656145772No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22040.41530837211931637No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG15420.2905651133430063No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14320.2698373815221693No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12180.22951252143435905No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11010.20746575213401422No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10550.19879779155439148No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10430.19653658444666378No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10200.19220260415685242No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9830.1852305489080254No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8980.16921366522828768No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8900.16770619382313592No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8520.16054570464866494No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6130.11550999641975541No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6000.11306035538638376No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5660.1066536019144887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)