FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007942668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007942668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences538246
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT60581.1255076674977613No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22000.4087350393686158No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18900.3511405565484927No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14970.2781256154249172No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14350.2666067188608926No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12520.23260739513159412No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10530.19563545293416024No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10500.19507808697138482No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10210.18969021599788946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9500.17649922154553865No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8410.15624825823136632No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7570.14064201127365553No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7130.1324673104862832No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7040.13079521259795707No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6960.1293089033638894No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6780.12596470758723707No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6130.11388844506043704No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5460.10144060522512012No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA5410.1005116619538278No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5410.1005116619538278No Hit

[OK]Adapter Content

Adapter graph